Analysis of gene expression using single molecule approaches. We use imaging techniques to study the mechanisms and kinetics of different processes along the gene expression pathway in yeast and higher eukaryotes. In particular, we combine single molecule techniques and quantitative analysis methods with mathematical modeling to gain better understanding of the general rules governing the expression of genes in complex systems.

Daniel Zenklusen est titulaire d'un doctorat en microbiologie de l'Université de Lausanne et a effectué des études postdoctorales dans le laboratoire de Robert H Singer à l'Albert Einstein College of Medicine à New York. Il est professeur au Département de biochimie et médecine moléculaire de la Faculté de médecine de l'UdeM depuis 2010.

Multiple PhD and postdoctoral positions are available in the Zenklusen laboratory. Available projects aim to study fundamental aspects of RNP biology (including the biology in introns and other coding and non-coding RNAs), to decipher mechanisms that facilitate the formation and composition of RNA-protein complexes, their topological organization, and how this facilitates gene expression. Moreover, we want to understand, how defects in RNPs lead to various disease phenotypes, including cancer and various neurodegenerative diseases. Projects will employ multidisciplinary approaches in the areas of single-molecule and super-resolution microscopy, RNA/protein biochemistry, genomics and CRISPR-Cas9-mediated genome editing, using mammalian cell culture models. 

Applicants should have expertise/undergraduate degree in cell biology, biochemistry and/or biophysics and experience in working with RNA, RNA-protein interactions and/or single molecule biophysical methods. 

Interested applicants should email a CV and letter of introduction, proposed start date, a list of publications (for postdoc candidates), names of two or three references who may be contacted for letters, and a brief description of future research interests to daniel.r.zenklusen@umontreal.ca

Dernières publications

1. Bensidoun P, Reiter T, Montpetit B, Zenklusen D^#, Oeffinger M^#. Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast. Molecular Cell 2022 Oct 20;82(20):3856-3871.e6. ^#co-corresponding authors

2. Zhao C, Biondic S, Vandal K, Björklund ÅK, Hagemann-Jensen M, Sommer TM, Canizo J, Clark S, Raymond P, Zenklusen D, Rivron N, Reik W, Petropoulos S. Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoids. Genome Research 2022 Aug 10;32(9):1627-41.

3. Jayabalan AK, Adivarahan S, Koppula A, Abraham R, Batish M, Zenklusen D,  Griffin DE and  Leung AKL. Stress granule formation, disassembly, and composition are regulated by alphavirus ADP-ribosylhydrolase activity. Proc Natl Acad Sci U S A, 2021 118 (6) e2021719118

4. Adivarahan S, Livingston N, Nicholson B, Rahman S, Wu B, Rissland O, Zenklusen D. Spatial organization of single mRNPs at different stages of the gene expression pathway. Molecular Cell. 08 Nov 2018, 72(4):727-738.e5

5. Lessard F, Igelmann S, Huot G, Le Calvé B, Montero B, St-Germain E, Mignacca L, Deschênes-Simard X, Moiseeva O, Zorca CE, Zenklusen D, Brakier-Gingras L, Bourdeau V and Ferbeyre G. Defective ribosome biogenesis in senescence reveals a novel checkpoint pathway to block cyclin dependent kinases. Nature Cell Biology. Jul;20(7):789-799

6. Rahman S, Zorca C, Traboulsi T, Noutahi E, Krause M, Mader S and Zenklusen D. Single-cell profiling reveals that eRNA accumulation at enhancer-promoter loops is not required to sustain transcription. Nucleic Acid Research. 2017 Apr 7;45(6):3017-3030. 

7. Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, Sali A, Rout MP. Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform. Cell 2016 Nov 17;167(5):1215-1228.e25 

8. Saroufim MA, Bensidoun P, Raymond P, Rahman S, Krause MR, Oeffinger M, Zenklusen D. The nuclear basket mediates perinuclear mRNA scanning in budding yeast. Journal of Cell Biology 2015 Dec 21;211(6):1131-40 

9. Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F and Zenklusen D. Single cell analysis reveals aspects of antisense RNA regulation and mode of action in PHO84 transcription repression. Nat Struct Mol Biol. 2013 Jul;20(7):851-8.
10. Hocine S, Raymond P, Zenklusen D, Chao JA and Singer RH. Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.  Nature Methods  2013 Feb;10(2):119-21.

Pour consulter la liste complète des publications